When the Comm facility is designated the Flagship unit via the ScenEditor, the datalinkages should still emanate from the Runway facility. This will not change. However, when the game is actually RUN with the Game Engine, the Allied Neutral units should appear. Is this not happening? Is the scenario actually being Run (unpaused) with the Game Engine (not the ScenEditor)?
In fact, I re-tested both the original scenario posted by you and the modified scenario posted by me and the Allied Neutral units actually appear in both scenarios, when run under the Game Engine. Theoretically, no modification was necessary.
What is the problem with the file attached to this thread that makes you unable to download it to the original computer?
Perhaps, the easiest way is to find some way to download the file and move it to original computer either via flash drive, CD, or disk.
At this point, I am quite confused as to what the problem appears to be.